STATISTICAL METHODS IN MICROARRAY ANALYSIS
(2 - 31 January 2004)

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Workshop Schedule
7 - 10 and 13 - 17 Jan 2004

 

Wed, 7 Jan 2004
09:00am - 09:15am	Welcome and opening remarks Louis Chen, Director of Institute for Mathematical Sciences, NUS Terry Speed, Chair of Program Organizing Committee
09:15am - 10:00am	Strategic design and meta-analysis of expression genomic experiments Edison Liu, Genome Institute of Singapore
10:00am - 10:45am	A comparison of microarray platforms Darlene Goldstein, Swiss Institute for Experimental Cancer Research
10:45am - 11:15am	--- Break ---
11:15am - 12:00nn	Comparative genomics of virulent and avirulent Burkholderia species using whole genome DNA microarrays Patrick Tan, National Cancer Centre, Singapore
12:00nn - 01:30pm	--- Lunch break ---
01:30pm - 02:15pm	Practical use of Bayesian mixture model for comparative microarray analyses in clinical oncology Philippe Broët, Institut Curie and INSERM, France
02:15pm - 03:00pm	Analysis of a large-scale split-split-plot experiment using the Affymetrix Barley1 GeneChip Dan Nettleton, Iowa State University
03:00pm - 03:30pm	--- Break ---
03:30pm - 04:15pm	Practical issues in Affymetrix analysis Mark Reimers, Karolinska Institute, Stockholm
	Contributed papers
04:15pm - 04:35pm	Statistical study of inter-lab and inter-platform agreement of DNA microarray data Lei Liu University of Illinois at Urbana-Champaign

 

Thu, 8 Jan 2004
09:15am - 10:00am	GPmerge – a computing program for cDNA microarray raw data processing Jinming Li, Nanyang Technological University, Singapore
10:00am - 10:45am	Understanding array CGH data Jane Fridlyand, University of California at San Francisco
10:45am - 11:15am	--- Break ---
11:15am - 12:00nn	Normalization for cDNA microarray experiments having many differentially expressed genes I-Shou Chang, National Health Research Institute, Taiwan
12:00nn - 01:30pm	--- Lunch break ---
01:30pm - 02:15pm	Error modeling, data transformation and robust calibration for microarray data Anja von Heydebreck, Max Planck Institute for Molecular Genetics, Germany
02:15pm - 03:00pm	Unsupervised determination of gene significance in time-course microarray data Karuturi Radha Krishna Murthy, Genome Institute of Singapore
03:00pm - 03:30pm	--- Break ---
03:30pm - 04:15pm	More on the analysis of time-course microarray data Terry Speed, University of California at Berkeley, U.S. and Walter and Eliza Hall Institute of Medical Research, Australia

 

Fri, 9 Jan 2004
09:15am - 10:00am	Bayesian hierarchical modelling of gene expression data Sylvia Richardson, Imperial College, UK
10:00am - 10:45am	Hierarchical Bayesian modelling of multiple arrays experiments Annibale Biggeri, University of Florence, Italy
10:45am - 11:15am	--- Break ---
11:15am - 12:00nn	Common parameters in parallel regressions: extracting information from within-array replicate spots Gordon Smyth, Walter and Eliza Hall Institute of Medical Research, Australia
12:00nn - 01:30pm	--- Lunch break ---
01:30pm - 02:15pm	Analyzing data from a splice array experiment Jean Yee Hwa Yang, University of California at San Francisco
02:15pm - 03:00pm	Spot shape modelling and saturated pixels in microarrays Mats Rudemo, Chalmers University of Technology, Sweden
03:00pm - 03:30pm	--- Break ---
03:30pm - 04:15pm	Considerations on sample classification and gene selection with microarray data using machine learning approaches Xuegong Zhang, Tsinghua University, China
	Contributed papers
04:15pm - 04:35pm	A practical projected clustering algorithm for gene expression profiles Kevin Yip, The University of Hong Kong
04:35pm - 04:55pm	Building genetic networks in gene expression patterns Eric Fung Siu Leung, University of Hong Kong

 

Sat, 10 Jan 2004
09:15am - 10:00am	A new web-based mouse phenotype analysis system (MPHASYS) to integrate molecular and pathophysiological end points of aging Jan Vijg, University of Texas Health Science Center at San Antonio
10:00am - 10:45am	Directed indices for exploring gene expression data Charles Kooperberg, Fred Hutchison Cancer Research Center, USA
10:45am - 11:15am	--- Break ---
11:15am - 12:00nn	Hidden Markov modelling of genomic interactions Ernst Wit, University of Glasgow, UK
12:00nn - 12:45pm	A comparative approach for multiple gene network inference using time-series gene expression data Guillaume Bourque, University of Montreal, Canada

 

Tue, 13 Jan 2004
10:00am - 10:45am	Spearman’s footrule as a measure of cDNA microarray reproducibility Byung Soo Kim, Yonsei University, Korea
10:45am - 11:15am	--- Break ---
11:15am - 12:00nn	Improvement of DNA microarray data analysis and better interpretation of microarray results Henry Yang He, Bioinformatics Institute, Singapore

 

Wed, 14 Jan 2004
10:00am - 10:45am	Nonparametric tests for replicated microarray data Mei-Ling Ting Lee, Harvard University
10:45am - 11:15am	--- Break ---
11:15am - 12:00nn	Planning of microarray studies: design power and sample size Alexander Whitmore, McGill University, Canada

 

Thu, 15 Jan 2004
02:00pm - 02:45pm	Integration of gene expression and protein activity data to estimate structure of a metabolic pathway Marek Kimmel, Rice University, USA
02:45pm - 03:15pm	--- Break ---
03:15pm - 04:00pm	A Bayesian mixture model for differential gene expression Kim Anh Do, M.D. Anderson Cancer Research Center, USA

 

Fri, 16 Jan 2004
03:00pm - 03:45pm	The analysis of proteomics spectra from serum samples Keith Baggerly, M.D. Anderson Cancer Research Center, USA

 

Sat, 17 Jan 2004
10:00am - 10:45am	Penalized likelihood methods for classification with microarrays Paul Eilers, Leiden University Medical Center, Netherlands

Organizers · Confirmed Visitors · Overview · Activities · Membership Application