Algorithmic Biology: Algorithmic Techniques in Computational Biology

(1 Jun - 31 Jul 2006)

Organizing Committee · Visitors and Participants · Overview · Activities · Membership Application

Visitors and Participants

NAME & AFFILIATION	PERIOD OF VISIT	TENTATIVE TITLE OF TALK
OVERSEAS VISITORS
Ruben Abagyan The Scripps Research Institute, La Jolla, USA abagyan@scripps.edu	14 - 21 Jul 2006	RECOMB: Computational structural proteomics and inhibitor discovery
Alberto Apostolico Georgia Institue of Technology, USA University of Padova, Italy axa@cc.gatech.edu	13 - 25 Jul 2006	BioAlg: Algorithms for irredundant motif discovery RECOMB: Monotony and surprise (Conservative approaches to pattern discovery)
Zhiwei Cao Shanghai Center for Bioinformation Technology zwcao@scbit.org	11 - 19 Jul 2006	BioAlg: A new approach identifying conserved genes in a path from commensalism to pathogenicity
Bethany Chan Hong Kong University, Hong Kong mychan@cs.hku.hk	13 - 17 Jul 2006	BioAlg: Linear-time haplotype inference on pedigree without recombinations
Francis Chin Hong Kong University, Hong Kong chin@csis.hku.hk	10 - 19 Jul 2006	RECOMB: Discovering motifs with transcription factor domain knowledge
Mehmet M. Dalkilic Indiana University, USA dalkilic@cs.indiana.edu	9 - 13 Jul 2006	Tutorial: An introduction to systems biology BioAlg: Motif discovery from both ends: combinatorial and probabilistic
Liuhuan Dong Shanghai Institutes for Biological Sciences, Shanghai, PRC dlh@picb.ac.cn	8 - 20 Jul 2006
Andreas Dress Shanghai Institutes for Biological Sciences, PRC dress@sibs.ac.cn	13 - 18 Jul 2006	BioAlg: Dan gusfield's "galled trees" and the block decomposition of metrics RECOMB: Applications of ILP in computational biology
Mikhail Gelfand Research and Training Center on Bioinformatics, Russia gelfand@iitp.ru	16 - 21 Jul 2006	RECOMB: Evolution of bacterial regulatory systems Math CS Camp: History of the Genetic Code
Stefan Grünewald Shanghai Institutes for Biological Sciences, Shanghai, PRC stefan@picb.ac.cn	11 - 18 Jul 2006	BioAlg: QNet: a method to construct circular phylogenetic networks from quartet data
Srinivasa K G M S Ramaiah Institute of Technology kgsrinivas@msrit.edu	11 - 23 Jul 2006	BioAlg: A semantic approach for mining biological databases
Wen Lian Hsu Institute of Information Science, Academia Sinica, Taiwan hsu@iis.sinica.edu.tw	11 - 18 Jul 2006	BioAlg: Protein subcellular localization prediction based on compartment-specific biological features RECOMB: A knowledge-based hybrid algorithm for protein secondary structure prediction
Tao Jiang University of California at Riverside, USA jiang@cs.ucr.edu	11 - 18 Jul 2006	BioAlg: A parsimony approach to genome-wide ortholog assignment RECOMB: An improved gibbs sampling method for motif discovery via sequence weighting
Tak Wah Lam Hong Kong University, Hong Kong twlam@cs.hku.hk	11 - 25 Jul 2006	BioAlg: Compressed text indexing and local alignment
Ming Li University of Waterloo, Canada mli@uwaterloo.ca	13 - 18 Jul 2006	BioAlg: New generation homology search RECOMB: A tale of two topics --- motif significance and sensitivity of spaced seeds
Kui Lin Beijing Normal University, PRC linkui@bnu.edu.cn	11 - 20 Jul 2006	BioAlg: Reconstructing protein-protein interaction map of saccharomyces cerevisiae
Lei Liu University of Illinois at Urbana-Champaign leiliu@uiuc.edu	17 - 19 Jul 2006
Satoru Miyano University of Tokyo, Japan miyano@ims.u-tokyo.ac.jp	15 - 17 Jul 2006	RECOMB: Computational challenges for top-down modeling and simulation of biological pathways
Bernard Moret University of New Mexico, USA Swiss Federal Institute of Technology, Switzerland moret@cs.unm.edu	11 - 16 Jul 2006	BioAlg: Large-scale phylogenetic reconstruction, the tree of life, and the CIPRES project
Axel Mosig Shanghai Institutes for Biological Sciences, Shanghai, PRC axel.mosig@gmail.com	11 - 18 Jul 2006	BioAlg: Optimizing barbecues: algorithms and applications
Franco Preparata Brown University, USA franco@cs.brown.edu	1 - 31 Jul 2006	BioAlg: Will sequencing-by-hybridization keep its original promise?
Peter Serocka Shanghai Institutes for Biological Sciences, Shanghai, PRC pserocka@sibs.ac.cn	11 - 18 Jul 2006	BioAlg: Visual exploration of multivariate image data through ultra-fast computation of similarity maps with the Lasagne tool
Ron Shamir Tel Aviv University, Israel rshamir@.tau.ac.il	13 - 18 Jul 2006	RECOMB: On the evolution of transcription regulation networks BioAlg: Computational methods for refinement and expansion of signaling pathways
Haixu Tang Indiana University, USA hatang@indiana.edu	17 - 26 Jul 2006	Tutorial: Introduction to computational proteomics and glycomics RECOMB: Characterization of transcriptional responses to environmental stress by differential location analysis
Martin Tompa University of Washington, USA tompa@cs.washington.edu	15 - 22 Jul 2006	RECOMB: Computational prediction of regulatory elements by comparative sequence analysis
Lusheng Wang City University of Hong Kong, Hong Kong lwang@cs.cityu.edu.hk	12 - 18 Jul 2006	BioAlg: Computing bi-clusters for microarray data analysis
Yuping Wang University of Missouri-Kansas City wangyup@umkc.edu	13 - 24 Jul 2006	BioAlg: High resolution genetic image analysis with wavelets
Yaochen Xu Shanghai Institutes for Biological Sciences, Shanghai, PRC xuyaochen@picb.ac.cn	10 - 20 Jul 2006
Siu-Ming Yiu The University of Hong Kong, Hong Kong smyiu@cs.hku.hk	9 Jul - 4 Aug 2006
Kai Zhong Zhang University of Western Ontario, Canada kzhang@csd.uwo.ca	10 - 16 Jul 2006	BioAlg: The similarity metric and the distance metric
GRADUATE STUDENTS
Jian Ma Pennsylvania State University, USA jianma@cse.psu.edu	10 - 17 Jul 2006	BioAlg: Reconstructing contiguous regions of an ancestral genome
David Chew National University of Singapore david.chew@nus.edu.sg	1 Jun - 31 Jul 2006	BioAlg: In Search of replication origins in herpesviruses: a computational approach
Kenny Hon Nian Chua National University of Singapore g0306417@nus.edu.sg	1 Jun - 31 Jul 2006	BioAlg: A graph-based approach to inferring protein function from heterogeneous data sources
Chih Yi Huang National Tsing Hua University abnercyh@gmail.com	11 - 19 Jul 2006
Chia-Han Chu National Tsing Hua University d938301@oz.nthu.edu.tw	11 - 19 Jul 2006
Yen Jen Lin National Tsing Hua University d928307@oz.nthu.edu.tw	11 - 19 Jul 2006	BioAlg: Analysis of genome rearrangement using reversals and block-interchanges
Nguyen Cam Thach National University of Singapore thachnguyen@nus.edu.sg	1 Jun - 31 Jul 2006	BioAlg: Reconstructing recombination networks from sequence data: small parsimony problem
Melvin Zhang National University of Singapore zhangzh3@comp.nus.edu.sg	1 Jun - 31 Jul 2006	BioAlg: Rearrangements in genomes with unequal content
LOCAL VISITORS
Guillaume Bourque Genome Institute of Singapore matbg@nus.edu.sg	1 Jun - 31 Jul 2006	Math CS Camp: Pancake Flipping, Bill Gates and Genome Rearrangements
Xin Chen Nanyang Technological University ChenXin@ntu.edu.sg	1 Jun - 31 Jul 2006	BioAlg: Computational prediction of operons in Synechococcus sp. WH8102
Kwok Pui Choi National University of Singapore stackp@nus.edu.sg	1 Jun - 31 Jul 2006
Yulan He Nanyang Technological University ASYLHe@ntu.edu.sg	1 Jun - 31 Jul 2006	BioAlg: Extracting protein-protein interactions from the literature using the hidden vector state model
Chee Keong Kwoh Nanyang Technological University asckkwoh@ntu.edu.sg	1 Jun - 31 Jul 2006	BioAlg: Pathway finder
Bing Lim Genome Institute of Singapore limb1@gis.a-star.edu.sg	1 Jun - 31 Jul 2006	BioAlg: Contribution of bioinformatics to understanding stem cell biology
Edison Liu Genome Institute of Singapore liue@gis.a-star.edu.sg	1 Jun - 31 Jul 2006	RECOMB: Systems pharmacology in cancer therapeutics: iterative informatics-experimental interface
Dong-Yup Lee National University of Singapore and BioTech Institute cheld@nus.edu.sg	1 Jun - 31 Jul 2006
Hon Wai Leong National University of Singapore leonghw@comp.nus.edu.sg	1 Jun - 31 Jul 2006	Tutorial: Introduction to computational proteomics and glycomics Math CS Camp: Pancake Flipping, Bill Gates and Genome Rearrangements
See-Kiong Ng Institute for InfoComm Research, Singapore skng@i2r.a-star.edu.sg	1 Jun - 31 Jul 2006
Meena Kishore Sakharkar Nanyang Technological University MMeena@ntu.edu.sg	1 Jun - 31 Jul 2006	BioAlg: Fusion genes as putative microbial drug targets in H. pylori
Ken W. K. Sung National University of Singapore ksung@comp.nus.edu.sg	1 Jun - 31 Jul 2006
Martti Tammi National University of Singapore martti@nus.edu.sg	1 Jun - 31 Jul 2006
Patrick, Boon Ooi Tan Genome Institute of Singapore tanbop@gis.a-star.edu.sg	1 Jun - 31 Jul 2006	BioAlg: Topological and functional discovery in a gene co-expression meta-network of gastric cancer
Chandra Verma BioInformatics Institute, Singapore chandra@bii.a-star.edu.sg	1 Jun - 31 Jul 2006
Hugo Willy Institute for Infocomm Research	1 Jun - 31 Jul 2006	BioAlg: On simultaneous knowledge extraction from protein protein interaction data
Lim Soon Wong National University of Singapore wongls@comp.nus.edu.sg	1 Jun - 31 Jul 2006	BioAlg: Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions
Von Bing Yap National University of Singapore stayapvb@nus.edu.sg	1 Jun - 31 Jul 2006
Louxin Zhang National University of Singapore matzlx@nus.edu.sg	1 Jun - 31 Jul 2006

Organizing Committee · Visitors and Participants · Overview · Activities · Membership Application