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Venue:

SCMC Lab 2 (S13-04-13)
Department of Physics
National University of Singapore

Fri, 2 Jan 2004

09:15am - 09:30am

Welcome and opening remarks
 

09:30am - 10:20am

Introduction to microarray technology and its impact on biomedical research
Lance Miller, Genome Institute of Singapore
  Presentation slides...

10:20am - 10:30am

--- Break ---

10:30am - 11:20am

Emergent biological properties through integration and mining of microarray datasets
Lance Miller, Genome Institute of Singapore
  Presentation slides...

11:20am - 11:30am

--- Break ---

11:30am - 12:20pm

Designing microarray experiments and looking for annotation information on the web
Jean Yang, University of California at San Francisco
  Presentation slides...

12:20pm - 02:00pm

--- Lunch break ---

02:00pm - 02:50pm

Exploratory data analysis and analysis of replicated microarray experiments
Gordon Smyth, Walter & Eliza Hall Institute of Medical Research
  Presentation slides...

02:50pm - 03:00pm

--- Break ---

03:00pm - 04:50pm

Hands-on lab:
(a) Quality assessment and introduction to the Bioconductor project
     Jean Yang, University of California at San Francisco
     Presentation slides...
(b) A point-and-click interface for cDNA microarray analysis
     James Wettenhall and Gordon Smyth, Walter & Eliza Hall Institute
     of Medical Research
     Presentation slides...

Sat, 3 Jan 2004

09:30am - 10:20am

Analysis of complex experiments with two or more treatment comparisons
Gordon Smyth, Walter & Eliza Hall Institute of Medical Research
  Presentation slides...

10:20am - 10:30am

--- Break ---

10:30am - 11:20am

Hands-on lab: Analysis of designed microarray experiments
Gordon Smyth, Walter & Eliza Hall Institute of Medical Research
  Instruction and lab materials...

Mon, 5 Jan 2004

09:30am - 10:20am

Clustering and classification
Jean Yang, University of California at San Francisco
  Presentation slides...

10:20am - 10:30am

--- Break ---

10:30am - 11:20am

Hands-on lab: Clustering and classification using bioconductor
Jean Yang, University of California at San Francisco
  Presentation slides...      Instruction and lab materials...

11:20am - 02:00pm

--- Lunch break ---

02:00pm - 02:50pm

Affymetrix low-level analysis
Mark Reimers, Karolinska Institute, Stockholm
  Presentation slides...

02:50pm - 03:00pm

--- Break ---

03:00pm - 03:50pm

Hands-on lab: Multi-chip models for Affymetrix using dChip
Mark Reimers, Karolinska Institute, Stockholm
  Data sets...

Tue, 6 Jan 2004

09:30am - 10:20am

Biological and practical issues
Mark Reimers, Karolinska Institute, Stockholm
  Presentation slides...

10:20am - 10:30am

--- Break ---

10:30am - 11:20am

Hands-on lab: Scaling transforms, and spatial effects, using R and limma
Mark Reimers, Karolinska Institute, Stockholm
  Data sets...

11:20am - 01:00pm

Visit to Genome Institute of Singapore (GIS) and viewing of its microarray facilities

01:00am - 02:00pm

--- Lunch break ---

02:00pm - 02:50pm

Experimental validation of results inferred by statistical methods
Patrick Tan, National Cancer Centre, Singapore
  Presentation slides...

02:50pm - 03:00pm

--- Break ---

03:00pm - 03:50pm

Experimental validation of results inferred by statistical methods
Patrick Tan, National Cancer Centre, Singapore
  Presentation slides...