Workshop on
Data Analysis and Data Mining in Proteomics
(9 - 12 May 2005)

Organizing Committee ·  Confirmed Visitors · Overview · Venue · Registration · Contacts · Sponsors

Program

 

Day 1 - Monday, 9 May 2005
08:15 am	Registration of participants and coffee/tea reception
08:45 am	Participants to be seated
08:55 am	Arrival of Guest of Honour, Tan Eng Chye, Dean, Faculty of Science
09:00 am	Opening ceremony -  Welcome address by Maxey Chung, Co- Chairman, Organizing    Committee -  Address by Louis Chen, Director, IMS -  Address by Guest of Honour, Tan Eng Chye, Dean, Faculty of    Science
Scientific Session 1	Proteomics Overview and Biomarker Discovery Chairperson: Maxey Chung, NUS
09:30 am	Proteomics, why, how and when Peter Roepstorff, University of Southern Denmark
10:30 am	--- Coffee Break ---
11:00 am	Experimental design for biomarker discovery in proteomics Marc Wilkins, University of New South Wales, Australia
11:45 am	Serum biomarker discovery of liver diseases using SELDI-TOF and bioinformatics Eastwood Leung, Genome Institute of Singapore
12:30 am	--- Lunch break ---
Scientific Session 2	Protein Identification by Mass Spectrometry Chairperson: Keli Ou, Agenica Research
02:30 pm	A peptide identification score-based approach of certain (important) tasks in proteomics Jacques Colinge, University of Applied Science Hagenberg, Austria
03:15 pm	Applying probability based protein identification to large data sets David Creasy, Matrix Science, UK
04:00 pm	Two-dimensional probability model for peptide matching using tandem mass spectra and protein databases Rovshan G. Sadygov, Thermo Electron Corporation
04:45 pm	Informal discussion sessions with refreshments
05:45 pm	End of Day 1

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Day 2 - Tuesday, 10 May 2005
Scientific Session 3	Protein Characterization by Tandem Mass Spectrometry Chairperson: Newman Sze, GIS
09:00 am	Mass spectrometry in proteomics: top down versus bottom up and studies of protein interaction Peter Roepstorff, University of Southern Denmark
09:45 am	Algorithms and score functions used in PEAKS de novo sequencing software Bin Ma, University of Western Ontario   Presentation slides: PDF...
10:30 am	--- Coffee Break ---
11:00 am	Statistical quality assurance in mass spectrometry for proteomics Paul Eilers, Leiden University Medical Centre, Netherlands
11:45 am	DTSeq: decision tree based De Novo peptide sequencing Wing-Kin Sung, National University of Singapore
12:30 pm	--- Lunch break ---
Scientific Session 4	Quantitative Proteomics Chairperson: Ed Manser, IMCB
02:30 pm	Algorithms for quantitative proteomics Newman S.K. Sze, Genome Institute of Singapore
03:15 pm	Proteomic analysis of industrially relevant cell lines Robin Philp, Bioprocessing Technology Institute, Singapore
04:00 pm	Coping with limitations of technology in deriving breakthrough conclusions from proteomics profiling experiments - could the biological heuristics help? Athula Herath, Nestle Research Center, Switzerland
04:45 pm	Informal discussion sessions with refreshments
05:45 pm	End of Day 2

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Day 3 - Wednesday, 11 May 2005
Scientific Session 5	Proteomics Data Standardization and Quality Evaluation Chairperson: Shashikant Joshi, NUS
09:00 am	Proteomic analysis of colorectal cancer: strategies for novel biomarker discovery Richard Simpson, Ludwig Institute for Cancer Research, Australia
10:00 am	Computational tools for standardized analysis of MS/MS data Andrew Keller, Institute for Systems Biology, USA
10:45 am	--- Coffee Break ---
11:15 am	SPLASH : Systematic Proteomics Laboratory Analysis and Storage Hub Siaw Ling Lo, National University of Singapore
12:00 nn	--- Lunch break ---
Scientific Session 6	Applications of Proteomics in Life Sciences Chairperson: Peter Preiser, NTU
02:30 pm	Systematic proteome analysis of breast cancer cell lines Keli Ou, Agenica Research, Singapore
03:15 pm	Proteomic investigation of colorectal cancer Qingsong Lin, National University of Singapore
04:00 pm	Proteome analysis of separated male and female gametocytes reveals novel sex specific Plasmodium biology Shahid Khan, Leiden University Medical Centre, Netherlands
04:45 pm	Informal discussion sessions with refreshments
05:45 pm	End of Day 3

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Day 4 - Thursday, 12 May 2005
Scientific Session 7	Mining Data from Studies in Protein – Protein Interactions Chairperson: Eastwood Leung, NUS
09:00 am	Mining motifs from protein interaction data See-Kiong Ng, Institute for Infocomm Research, Singapore   Presentation slides: PDF...
09:45 am	Binding motif pairs from interacting protein groups Limsoon Wong, Institute for Infocomm Research, Singapore   Presentation slides: PDF...
10:30 am	--- Coffee Break ---
11:00 am	Atomistic computer simulations: an essential toolkit in modern proteomics Chandra Verma, Bioinformatics Institute, Singapore
11:45 am	What visualization can do for structural biology? Yiyu Cai, Nanyang Technological University
12:30 pm	--- Lunch break ---
Scientific Session 8	Protein Annotation and Mining for Function Chairperson: Robin Philp, BTI
02:30 pm	Predicting functional family of novel enzymes irrespective of sequence similarity: a statistical learning approach Yu Zong Chen, National University of Singapore
03:15 pm	BIND: the Biomolecular Interaction Network Database Susan Moore Blueprint Asia, Singapore
04:00 pm	Concluding Remarks
04:15 pm	Informal discussion sessions with refreshments
05:15 pm	End of the Workshop

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Organizing Committee ·  Confirmed Visitors · Overview · Venue · Registration · Contacts · Sponsors